Tls anisotropic refinement

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WebMay 8, 2007 · Iterations of normal-mode-based anisotropic B factor refinement, TLS, positional refinement using REFMAC5 ( 34) in the CCP4 Suite ( 35 ), and manual adjustments using O ( 36) were carried out until convergence. The starting point of our refinement was an unpublished all-atom model of FTCD. WebAnisotropic Refinement NCS constrained refinement (from 5.6.0087) EM fit related keywords Geometry keywords Using segment id External distance, angle etc restraints Harmonic restraints and special positions (jelly body etc) Torsion angle restraints VDW restraints (excluding antibumping between specified atoms - 5.6.0065)

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WebThis article describes the implementation of the TLS parameterization in the macromolecular refinement program REFMAC. Furthermore, GAPDH and GerE have two … WebNov 27, 2014 · 6 References Analysis PARVATI - Protein Anisotropic Refinement Validation and Analysis Tool. The PARVATI server accepts a PDB file containing ANISOU records or TLS records. ANISOU records The ANISOU records present the … ladymoor bridgnorth

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WebJan 5, 1998 · Crystal structures of turkey egg lysozyme (TEL) and human lysozyme (HL) were refined by full-matrix least-squares method using anisotropic temperature factors. The refinement converged at the conventional R-values of 0.104 (TEL) and 0.115 (HL) for reflections with Fo > 0 to the resolution of 1 ... Macromolecules http://my.yetnet.ch/dergutemensch/crystallography/refinement.htm WebRefinement of TLS parameters only using multiple TLS groups: % phenix.refine data.hkl model.pdb strategy=tls tls_group_selections.params where, similar to the rigid body or … property price register athy

Tls anisotropic refinement

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WebNational Center for Biotechnology Information WebUniaxially textured TlBaSrCa/sub 2/Cu/sub 3/O/sub 9/ bulk ceramics have been fabricated by slip casting in magnetic fields up to 9 Tesla followed by sintering and reduction …

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WebFeb 7, 2014 · Overall, anisotropic refinement always performs better than isotropic refinement as indicated by R and R free factors, which are typically lower by ~0.02 in the former case. On the other hand, the ... WebTLS refinement is therefore fast and can be used routinely. Examples of TLS refinement are given for glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and a transcription activator GerE, for both of which there is data to only 2.0 Angstrom, so that individual anisotropic refinement is not feasible.

http://phenix.lbl.gov/pipermail/phenixbb/2012-July/018744.html WebAny! Resolution only affects level of detail: • Resolution < - full anisotropic refinement • Resolution ~ - marginal for full anisotropic refinement. But can do detailed TLS, e.g. Howlin et al, Ribonuclease A, , 45 side chain groups; Harris et al, papain, 1.6Å, 69 side chain groups. • Resolution -⇒model molecules/domains rather than ...

WebNov 2, 2007 · The theory underlying TLS parameterization has been presented in detail by Schomaker and Trueblood 18., 19. and Howlin et al. 20 In summary, apart from improving agreement between an atomic structure and diffraction data by approximating anisotropic disorder of atoms, TLS refinement yields translational, librational and screw tensors for … WebApr 10, 2013 · Section snippets The empirical model for computing the atomic cross-correlation by using TLS parameters. Based on the TLS model (Schomaker and Trueblood, 1968), we represent the correlation between isotropic displacements of an atom as a function of the spatial coordinated and the TLS parameters, defined by Sternberg et al. …

WebTLS refinement is therefore fast and can be used routinely. Examples of TLS refinement are given for glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and a transcription activator GerE, for both of which there is data to only 2.0 Å, so …

http://phenix.lbl.gov/pipermail/phenixbb/2012-July/018742.html property price register ballinahttp://my.yetnet.ch/dergutemensch/crystallography/refinement.htm ladymoor staffordshirehttp://www.uoxray.uoregon.edu/local/manuals/ccp4-5.0.2/ccp4/html/refmac5/usage/tls_usage.html ladynoir fan ficsWebTurn on main valves. Pressurize systems and check backflow preventer for leaks. Check battery, fuse and power adapter and wiring conditions at controller. Run test on each zone … property price index ukWebTLS and individual anisotropic ADP cannot be refined at once for the same group Certain refinement strategies are not available for joint X-ray/neutron refinement No NCS constraints (restraints only) Atoms with anisotropic ADP in NCS groups No Simulated Annealing for selected fragments property price register castleknockWebManufacturer of theatrical and television lighting equipment. ladymoth miraculoushttp://www.csb.yale.edu/userguides/datamanip/ccp4/ccp4i/help/modules/refinement.html property price register blackrock cork